Folta Lab Publications (&kf's pubs)

Books, Edited

  • Folta, K.M(2012) Berries.  Genomics of Crop Plants (Series). C. Kole, series ed. Science Publishers, Manchester, New Hampshire, 300 pp.
  • Folta, K.M., Gardiner, S.E. eds. (2009) Genetics and Genomics of Rosaceae. R. Jorgensen Series ed. Springer, New York,  480pp.

Book Chapters

  • Amaya, I., Pillet, J., Folta, K.M. (2016) Identification of Genes Responsible for Natural Variation in Volatile Content Using Next-Generation Sequencing Technology.  In Plant Signal Transduction, Methods and Protocols.  J.R. Botella and M.A. Botella, Eds.  Humana Press, New York, 241 pp.
  • Folta, K.M. (2015) Foreword: Al Quesadilla and the Rise of Food Terrorism. In The Fear Babe. K. Senapahy, M. Draco, and M. Alsip. Senapath Press. 440 pp. 
  • Pillet, J., Folta, K.M. (2014)  Anthocyanins in Strawberry.  In Plant Pigments. X Chen, Ed. In press.
  •  Folta, K.M.(2012)The guiding force of photons. In Photosynthesis. M. Najafpour, Ed. InTech Publishing, Rijeka, Croatia.  635pp.
  • Chandler, C.K., Folta, K.M., Dale A.M., Herrington, M.(2012) Strawberry.  In Breeding of Fruit and Nut Crops. D. Byrne and M. Badeness Eds. Springer, New York
  • Folta, K.M.,Denoyes-Rothan, B., Rousseau-Gueutin, Stewart, P.J.(2011).  Strawberry: Genome Composition, Maps and Markers.  In Genetics Genomics and Breeding of Berries.  K. Folta and C. Kole eds. Science Publishers, Manchester NH. 139-161.
  • Folta, K.M., Gardiner, S.E.(2009) Genomics opportunities in apricot.  Genetics and Genomics of Rosaceae.  Folta and Gardiner Eds.  Richard Jorgensen, Series Ed. Pp. 321-351.
  • Piqueras, A., Alburquerque, N., Folta, K.M. (2009) Explants used in the generation of transgenic plants. In: Development and Deployment of Transgenic Plants. C. Kole Ed. Springer, New York.
  • Dhingra, A, James, V.A., Koop, H.U., Mok, M.C., DePaepe, R., Gallo, M. Folta, K.M. (2007) Transgenic Tobacco - Lighting Cellular Function. In A Compendium of transgenic crop plants, Kole C and Hall TC (EdS). Blackwell Publishing.
  • Folta, K.M.(2005) Green light signals and plant development. In Light Signaling in Plants, M. Wada, K. Shimizaki and M. Iino eds. Springer-Verlag Publishing, Tokyo.

Peer-Reviewed Journal Articles

  • Carvalho, S.D.,  Chatterjee, M., Coleman, L, Clancy, M.A., Folta, K.M. (2016) Analysis of BLOCK OF CELL PROLIFERATION 1 (BOP1) activity in strawberry and Arabidopsis.  Plant Science (in press)
  • Mahoney, L.L., Sargent, D.J., Abebe-Akele, F., Wood, D.J., Ward, J.A., Bassil, N.V., Hancock, J.F., Folta, K.M., Davis, T.M. (2016) A high-density linkage map of the ancestral diploid strawberry, Fragaria iinumae, using SNP markers from the ISTRAW90 array and GBS. Plant Genome (in press).
  • Wu, J., Folta, K.M., Xie, Y., Jiang, W., Lu, J., Zhang, Y. (2016) Overexpression of Muscadinia rotundifolia CBF2 gene enhances biotic and abiotic stress tolerance in Arabidopsis.  Protoplasma. (in press)
  • Sanchez-Sevila, J.F., Horvath, A., Botella, M., Gaston, A., Folta, K.M., Kilian, A., Denoyes, B., Amaya, I (2015).  Diversity Arrays Technology (DArT) marker platforms for diversity analysis and linkage mapping in a complex crop, the octoploid, cultivated strawberry (Fragaria × ananassa). Plos One DOI: 10.1371/journal.pone.0144960.
  • Folta, K.M., Carvalho, S.D. p (2015) Photoreceptors and control of horticultural plant traits.  Hortscience.  (in press)
  • Silva, K.J. g, Brunings, A., p Peres, N.A., Mou, Z., Folta, K.M. (2015).  The Arabidopsis NPR1 gene confers broad-spectrum disease resistance in strawberry. Transgenic Research. 24: 693-704.
  • Pillet, J. p, Yu, H.W. g, Chambers, A.H. g, Whitaker, V.M., Folta, K.M. (2015). Identification of candidate flavonoid pathway genes using transcriptome correlation network analysis in ripe strawberry (Fragaria x ananassa) fruits. Journal of Experimental Botany. erv205.
  • Wang, Y., Zhang, T., Folta, K.M. (2015) Green light augments the far-red induced shade response. Plant Growth Regulation. Doi 10.1007/s10725-015-0046-xT
  • Folta, K.M. (2015) Molecular-genetic extensions of Vavilov’s predictions. Hortscience. 50:777-779.
  • Wang, Y., Folta, K.M. (2014) Phototropin 1 and dim-blue light modulate the red light de-etiolation response.Plant Signaling and Behavior. (in press)
  • Carvalho, S.D., Folta, K.M. (2014) Environmentally-modified organisms: Expanding plant genetic potential with light. Critical Reviews in Plant Science. 33:486-508
  • Taghavi, T.S.Folta, K.M. (2014) A comparison of wild and cultivated strawberries for nitrogen uptake and reduction. Horticulture, Environment and Biotechnology 55: 196-206
  • Carvalho, S.D.p, Folta, K.M. (2014) Sequential light programs to affect kale sprout appearance and nutrition.Horticultural Research 1: 8.
  • Chambers, A.H.g,  Plotto, A., Bai, J., Whitaker, V.M., Folta, K.M.(2014) Identification of a strawberry flavor gene using an integrated genetic-genomic-analytical chemistry approach.  BMC Genomics  15: 217
  • Zhang, Q., Folta, K.M., Davis, T.M. (2014) Somatic embryogenesis, tetraploidy, and variant leaf morphology in transgenic diploid strawberry (Fragaria vesca subspecies vesca ‘Hawaii 4’) BMC Plant Science  14: 14-23.
  • Chambers, A.H.g, Evans, S.A.u, Folta, K.M. (2014) Methyl anthranilate and γ-decalactone inhibit strawberry pathogen growth and achene germination. Journal of Agricultural and Food Science 61: 12625-12633.
  • Schwieterman, M.L., Colquhoun, T.A., Bartoshuk, L.M.,  Jaworski, L.A., Gilbert, J.L., Tieman, D.M., Odabasi, A.Z., Moskowitz, H.K., Folta, K.M., Klee, H.J., Sims, C.A., Whitaker, V.M., Clark, D.G. (2014) Strawberry Flavor: Diverse chemical recipes, a seasonal influence, and their effect on sensory perception.  PLoS One  PLoS One  9: e88446
  • Chambers, A.H., Pollard, H., Folta, K.M. (2013) Limitations of morphological methods of ploidy estimation inFragaria.  Journal of Berry Research  3: 135-149.
  • Clancy, M.A., Rosli, H.G.p, Chamala, S., Barbazuk, W.B., Civello, P.M., Folta, K.M. (2013) Validation of reference transcripts in strawberry (Fragaria spp.).  Molecular Genetics and Genomics  288:671-681.
  • Amil-Ruiz , F., Garrido-Gala, J., Blanco-Portales, R., Folta, K.M., Muñoz-Blanco, J., Caballero, J.L. (2013) Identification and validation of reference genes for transcript validation in strawberry (Fragaria x ananassa) defense response. PLoS One  8:8 e70603
  • Colquhoun, T.A., Schwieterman, M.L., Gilbert, J.L., Jaworski, E.A. Langer, K.M., Jones, C.R., Rushing, G.V.,  Hunter, T.M., Olmstead, J.W, Clark, D.G., Folta, K.M. (2013) Light modulation of plant flavor and aroma compounds in select flowers and fruits. Postharvest Biology and Technology. 86:37-44.
  • Chambers, A. g, Carle, S.u, Njuguna, W., Chamala, S., Bassil, N., Barbazuk, B., Folta, K.M. (2013)A genome-enabled, high throughput, and multiplexed fingerprinting platform for strawberry (Fragaria L.) Molecular Breeding  31: 615-629.
  • Wang, Y.g Folta, K.M.(2013)Green light contributions to plant growth and development. American Journal of Botany 100: 70-78.
  • Wang, Y. g, Maruhnich, S.A. g, Mageroy, M.H. g, Justice, J.R.u, Folta, K.M.(2013)Phototropin 1 and cryptochrome action in response to green light in combination with other wavelengths. 237: 225-37.
  • Folta, K.M. (2012) Functionalizing the strawberry genome.  Int'l J. FruitScience.13: 162-74.
  • Chambers, A.g, Whitaker, V.M., Gibbs, B.u, Plotto, A.Folta, K.M. (2012) Detection of the linalool-producing NES1 variant across diverse strawberry (Fragaria spp.) accessions.Plant Breeding 131:437-443.
  • Jung,S., Cestaro, A., Troggio, A., Main, D., Zheng, P., Cho, I., Folta, K.M., Sosinski, B., Abbott, A., Celton, J-M., Arus, P., Shulaev, V., Verde, I., Morgante, M., Rokhsar, D.S., Velasco, R., Sargent, D.J.(2012)Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamiliesBMC Genomics. 13: Article 29
  • Colquhoun. T.A., Levin, L.A., Moskowitz, H.R., Whitaker, V.M., Clark, D.G., Folta, K.M. (2012) Framing the perfect strawberry: An exercise in consumer-assisted selection of fruit crops J. Berry Research 2: 45-61.
  • Rahemi, A., Fatahi, R., Ebadi, A., Taghavi, T., Hassani, D., Gradziel, T., Folta, K.M., Chaparro, J.(2012) Genetic diversity of some wild almonds and related Prunus species revealed by SSR and EST-SSR markers.Plant Systematics and Evolution  298:173-192.
  • Zhang, T. g, Folta, K.M. (2012) Green light signaling and adaptive response. Plant Signaling and Behavior. 7: 1-4.
  • Chatterjee M.p, Bermudez-Lozano, C.L, Clancy, M.A., Davis, T.M., Folta, K.M.(2011) A Strawberry KNOX Gene Regulates Leaf, Flower and Meristem ArchitecturePLoS One. 9:e24792.
  • Zhang, T. g, Maruhnich, S.A. g, Folta, K.M. (2011) Green Light Induces Shade Avoidance Symptoms. Plant Physiol. 157: 1528-1536.
  • Sargent, D.J.,  Kuchta, P., Lopez-Girona E., Zhang, H., Davis, T.M.,  Celton, J-M,  Marchese, A., Korbin, M., Folta, K.M.,  Shulaev, V. and Simpson, D.W. (2011) Simple Sequence Repeat Marker Development and Mapping Targeted to Previously Unmapped Regions of the Strawberry Genome Sequence.  Plant Genome.  4:165-177.
  • Gao, J., Wang, Y. g, Folta, K.M., Krishna, V., Bai, W., Indeglia, P., Georgieva, A., Nakamura, H., Koopman, B., Moudgil, B.(2011) Polyhydroxy Fullerenes: Beneficial effects on growth and lifespan in diverse biological models. PLoS One 6: e19976.
  • Shulaev, V. et al., (75 authors, Folta contributing(2011)The genome of woodland strawberry (F. vesca).Nature Genetics 43:109-U51
  • Rivarola, M., Chan, A.P., Liebke, E.D,. Melake-Berhan, A., Quan, H., Cheung, F., Ouyang, S., Folta, K.M.,Slovin, J.P., Rabinowicz, P.D. (2011). Abiotic stress related sequence tags from the diploid strawberry Fragaria vescaThe Plant Genome 4: 12-23.
  • Wu, J.A.g, Zhang, Y.L., Zhang, H.Q., Huang, H., Folta, K.M., Lu, J.A., (2010) Whole-genome wide expression profiles of Vitis amurensis grape responding to downy mildew using Solexa sequencing technology.  BMC-Plant Biology 10: article 234.
  • Hamner-Mageroy, M.g, Hemmingway, C., Folta, K.M., Shinkle, J.(2010)Physiological evidence of phototropin action in response to UV-C irradiation. Plant Signaling and Behavior 5: 1204-10.
  • Folta, K.M., Clancy, M.A., Chamala, S., Dhingra, A., Brunings, A.M.p, Gomide, L., Kulathinal, R.J., Peres, N.A., Davis, T.M., Barbazuk, W.B. (2010) A transcript accounting from diverse tissues of a cultivated strawberry (Fragaria ×ananassa) 3:90-105.
  • Davis, T.M., Shields, M.E., Zhang, Q., Tombolato-Terzic, D.g, Bennetzen, J.L., Pontaroli, A.C., Wang, H., Yao, Q., Sanmiguel, P., Folta, K.M. (2010) An examination of targeted gene neighborhoods in strawberry.  BMC Plant Biol. 10:81+.
  • Brunings, A.p, Moyer, C., Peres, N., Folta, K.M. (2010) Implementation of simple sequence repeat markers to genotype Florida strawberry varieties. Euphytica
  • Stewart, P.J.g, Folta, K.M.(2010) Photoperiodic flowering in strawberry (Fragaria spp.). Crit Rev Plant Sci. 5:15-35.
  • Mouhu, K.g, Hytonen, T.Folta, K.M., Rantanen, M., Paulin, L., Auvinen, P., Elomaa, T(2009)Identification of flowering genes in strawberry, a perennial SD plant.  BMC- Plant Biology  9:122+.
  • Slovin, J.P., Schmitt, K.u, Folta, K.M. (2009) An inbred line of the diploid strawberry Fragaria vesca f. semperflorens for testing gene function. BMC-Plant Methods 5:15.
  • Pontaroli, A.M., Rodgers, R., Zhang, Q,. Davis, T.M. Folta, K.M., San Muigel, P.,Bennetzen, J.L.(2009) Gene content and distribution in the nuclear genome of Fragariavesca.  Plant Genome. 2:93-101.
  • Folta, K.M., Childers, K.S.u (2008)  Light as a growth regulator: Controlling plant biology with narrow-bandwidth solid-state lighting systems. HortScience 43:1957-1964.
  • Shulaev, V., Korban, S.S., Sosinski, B., Abbott, A.G., Aldwinckle, H.S., Folta, K.M., Iezzoni, A., Main, D., Arus, P., Dandekar, A.M., Lewers, K., Brown, S.K., Davis, T.M., Gardiner, S.E., Potter, D., Veilleux, R.E. (2008)Multiple models for Rosaceae genomics. Plant Physiol.  147: 985-1003.
  • Paul, A.L., Folta, K.M.,  Ferl, R.J. (2008) 14-3-3 Proteins, red light, and photoperiodic flowering: A point of connection? Plant Signaling and Behavior 3: 511-515.
  • Folta, K.M., Paul, A.L., Mayfield, J.M., Ferl, R.J.(2008)14-3-3 isoforms participate in red light signaling and photoperiodic flowering.Plant Signaling and Behavior 3: 304 - 306.
  • Folta, K.M., Paul, A.L., Mayfield, J.M., Ferl, R.J. (2007) 14-3-3 Isoforms participate in red light signaling and photoperiodic flowering.  Plant Signaling and Behavior, 3 
  • Chawla, R., Nicholson, S.J., Folta, K.M.Srivastava, V. (2007) Transgene-induced silencing of Arabidopsis phytochrome A via heritable exonic methylation.  Plant J. 52:1105-1118.
  • Mayfield, J.M., Folta, K.M., Paul, A.L., Ferl, R.J. (2007) The 14-3-3 proteins µ and u influence transition to flowering and early phytochrome response. Plant Physiol. 145: 1692-1702.
  • Folta, K.M., Maruhnich, S.A.g (2007) Green light:  A signal to slow down or stop.  J Exper Bot, 58: 3099-3111.
  • Folta, K.M., Kaufman, L.S. (2007)  Isolation of Arabidopsis nuclei and measurement of gene transcription rates using nuclear run-on assays. Nature Protocols 1:3094-3100.
  • Folta K.M., Dhingra, A.p (2006) Transformation of Strawberry: The Basis for Translational Genomics in Rosaceae.  InVitro Cell and Dev Biol-- Plant 42: 482-490.
  • Dhingra, A.p, Bies D.H., Lehner, K.R.u and Folta K.M. (2006) Green light adjusts plastid transcript accumulation during de-etiolation. Plant Physiol, 142:1256-1266.
  • Moore, M.J., Dhingra, A.,p Soltis, P.S., Shaw, R., Farmerie, W.G., Folta, K.M.Soltis, D.E. (2006)  Rapid and accurate pyrosequencing of angiosperm plastid genomes. BMC-Genomics 6: 17-27.
  • Folta, K.M., T.M. Davis (2006) Strawberry genes and genomics. Crit Rev in Plant Sci 25: 399-415.
  • Folta, K.M., Dhingra, A.p, Howard, L.u, Stewart, P.J.g, Chandler, C.K. (2006) Characterization of LF9, an octoploid strawberry genotype selected for rapid regeneration and transformation. Planta  224:1058-1067.
  • Sargent, D.J., Clarke, J., Simpson, D.W., Tobutt, K.R., Arus P., Monfort A., Vilanova S., Denoyes-Rothan B., Rousseau M., Folta K.M., Bassil N.V., Battey N.H. (2006) An enhanced microsattelite map of diploid Fragaria.Theoret Appl Genet  112:1349-59.
  • Bassil, N.H., Dunn, M., Folta, K.M. and Lewers, K (2005)Microsatellite markers for Fragaria from ‘Strawberry Festival’ ESTs. Mol Ecol Notes, 6:473-476.
  • Dhingra, A.p, Folta, K.M. (2005) ASAP: Amplification, sequencing and annotation of plastomes. BMC-Genomics  6:176-188.
  • Folta, K.M., Koss, L.W., McMorrow, R.,u Kim, H-H., Kenitz, J.D.u, Wheeler, R.W., Sager, J.C. (2005) Design and fabrication of LED-based light arrays for plant research. BMC—Plant Biol 5:17-27.
  • Folta, K.M.Staton, M., Jung, S., Stewart, P.J.g, Bies, D.H., Main, D. (2005) Expressed sequence tags (EST’s) and simple sequence repeat (SSR) markers from octoploid strawberry (Fragaria x ananassa). BMC-Plant Biol 5:12-22.
  • Spalding, E.P., Folta, K.M. (2005) Illuminating topics in plant photobiology. Plant Cell and Environ  28: 39-53.
  • Bies, D.H., Folta K.M. (2004) An effective substitute for triisopropylnaphthalene-sulfonic acid in the preparation of plant RNA. Anal Biochem. 333: 201-203.
  • Folta, K.M. (2004) Green light increases early stem elongation rate, antagonizing light-mediated growth inhibition. Plant Physiol  135: 1407-1416.
  • Folta, K.M., Leig, E.J., Durham, T., Spalding, E.P. (2003) Primary inhibition of hypocotyl elongation requires phototropin1-dependent increases in cytosolic calcium. Plant Physiol 133:1464-1470.
  • Folta, K.M., Pontin, M.A., Karlin-Neumann, G., Bottini, R., Spalding, E.P. (2003) Genomic and physiological studies demonstrate roles for auxin and gibberellin in the early phase of cryptochrome 1 action in blue light.Plant J  133:1464-1470.
  • Folta, K.M. and Kaufman, L.S. (2003) Phototropin1 is required for high-fluence blue-light-mediated mRNA destabilization. Plant Mol Biol  51: 607-616.
  • Parks, B.M., Folta, K.M. and Spalding, E.P. (2001) Photocontrol of stem growth. Curr. Opin. Plant Biol. 4: 436-40.
  • Folta, K.M., Spalding, E.P. (2001) Opposing roles for phytochrome A and phytochrome B in early blue-light-mediated hypocotyl growth inhibition. Plant J. 28: 330-340.
  • Folta, K.M.Spalding, E.P. (2001) Unexpected roles for cryptochrome 2 and phototropin revealed by high-resolution analysis of blue light-mediated hypocotyl growth inhibition. Plant J 26:471-478.
  • Folta, K.M. and Kaufman, L.S. (2000) Preparation of transcriptionally active nuclei from etilolated Arabidopsis thaliana.  Plant Cell Reports 19:504-510.
  • Anderson, M.B., Folta K.M., Warpeha, K.W., Gibbons, J., Gao J. Kaufman, L.S. (1999).  Blue-light directed destabilization of the pea Lhcb 1*4 transcript is dependent upon sequences in the 5’-UTR. Plant Cell 11:1579-1590.
  • Folta, K.M., L.S. Kaufman (1999).  Regions of the pea Lhcb1*4 necessary for blue-light regulation in transgenic Arabidopsis. Plant Physiol. 120:747-756.
  • Wang, L., Piller, K.M., Folta, K.M., Kaufman, L.S. (1995) A developmentally-regulated ribosomal DNA-binding factor in pea leaves. J. Cell Biochem. 21:492.
  • Polans N.O., Folta K.M. (1992) The mapping of Pea-2 supports the assignment of Vc-5 and rb to a specific region of chromosome 3. Pisum Genet. 24: 79-81
  • Folta, K.M., Polans, N.O. (1992) Evidence supporting the revision and integration of the pea chromosome 7 linkage map. Pisum Genet. 24: 44-47.
  • Polans, N.O., Folta, K.M., Elliot, R.C., Thompson, W.F. (1991) The inheritance and linkage mapping of Ferredoxin-1 in pea. Journal of Heredity 82:259-261